Species

Synopsis

Calls the Species taxon tagger.

Description

Species applies the Species taxon tagger on the contents of the sections. The Species software must be installed in the speciesDir directory. Species crerates an annotation for each taxon tagged by Species .

Snippet

📋

<species class="Species">
    <speciesDir></speciesDir>
    <targetLayer></targetLayer>
</species>

Mandatory parameters

speciesDir

Directory where the Species software is installed.

targetLayer

Layer where to store the tagged taxon names.

Optional parameters

constantAnnotationFeatures

Constant features to add to each annotation created by this module.

taxidFeature

Feature where to store the identifier of the tagged taxon.

documentFilter

Only process document that satisfy this expression.

sectionFilter

Process only sections that satisfy this expression.

Deprecated parameters

targetLayerName

Deprecated alias for targetLayer .